#Geneious prime software how to#
#Geneious prime software password#

Sanger analysis in Geneious Biologics is much the same process as the NGS workflow described above. Running a Sanger Analysis with the Antibody Annotator There is a step-by-step NGS analysis example here. The Antibody annotator will output a result document with the words Annotated & Clustered appended to the end of your input file name.

You can find out more about the options available here or by clicking the Help button on the bottom right corner of the Antibody annotator popup. Once the appropriate settings have been selected, click Run to start the analysis. To run an NGS analysis with the Antibody annotator, select the merged data, click Annotation and select Antibody Annotator in the dropdown. Once the reads are merged, a new document containing the merged reads will be generated (as well as one contained the unmarked ones). You can find out more about the Set and merge paired reads operation in the following Knowledge Base articles Set paired reads and Merge paired reads. In this example, the data are paired and merged.

To pair corresponding reads, select the appropriate settings for the data and click Run. To pair reads, select a fastq file or multiple fastq files, click Pre-processing and click Set & merge paired read in the dropdown. To view flowcharts guiding you through the Biologics platform, see this article.

#Geneious prime software how to#

There is more information on how to set the integration up here.Īnalyzing NGS data with the Antibody Annotator The integration enables easy upload of sequences to Biologics from Prime, and allows you to view Biologics sequence documents in Prime. If you have Geneious Prime software, you can also try out our beta integration with Prime. Once you have created a folder, files can be uploaded using the Upload button or via drag-and-drop.įor more detail about how file upload works and how to troubleshoot any issues, see here. You can find out more about sharing folders here. Note that you can only manage sharing of your top level folders. You can set the access level for all members of your organization as well as add new members by typing your colleagues’ name or email address into the field and select the user you wish to add. To share folders, select Manage Sharing in the popup menu for folder, which can be accessed by clicking on the menu button (vertical ellipsis). Once you’ve created a folder, you can create more Folders within this folder by hovering your mouse over the folder and clicking the menu button.įiles can be moved from one folder to another using the 'Move' icon at the top of the document table.įolders can also be moved by clicking and dragging them to the desired location.īy default, any new folder is not shared until you set up the sharing options. To create a folder, hover over Shared workspace, click the menu button (3 vertical dots) and click New folder in the popup menu.

#Geneious prime software password#

Only administrators can manage users.įill in the appropriate details and click Create User.Ī Geneious account activation email will be sent to the email address which contains instructions on password setup and account activation.įor more information about users and user groups, see here.įolders (folder icon in the folder tree) may contain any mixture of documents, such as nucleotide sequences, protein sequences, sequence alignments, and trees. To add a new user into your organisation, click Users in the sidebar and click New in the main page. Some of our users also use Microsoft Edge Chromium. We suggest you use the latest version of Chrome so you will always get the best experience. Important: Google Chrome is the browser we test with and officially support. For more detail about account set up and trouble shooting tips, see here. Simply follow that link to set up your password. When you start with Geneious Biologics, you will receive an email from Geneious with an account activation link. The flowcharts also provide guidance on how to analyse various kinds of sequences - Sanger, NGS and NGS with UMIs and/or Barcodes (Single Cell Analysis). The Workflows and Flowcharts for Antibody Analysis page contains visual representations of the paths through Geneious Biologics from pre-processing to analysis and beyond. Step-by-step tutorials of common workflows can also be found here. More detailed articles can be found in this knowledge base, and several are directly linked within this guide.

Barcodes, UMIs, Single Cell Analysis and 10X.

Analyzing NGS sequences with the Antibody annotator.

This guide aims at getting you up and running quickly with Geneious Biologics and includes the following topics: If you are using our Starter plan, please refer to our Getting Started Guide for Starter Plan.